According to the Microsoft Developer Network, HttpOnly is an additional flag included in a Set-Cookie HTTP response header. Using the HttpOnly flag when generating a cookie helps mitigate the risk of client side script accessing the protected cookie (if the browser supports it).
If the HttpOnly flag (optional) is included in the HTTP response header, the cookie cannot be accessed through client side script (again if the browser supports this flag). As a result, even if a cross-site scripting (XSS) flaw exists, and a user accidentally accesses a link that exploits this flaw, the browser (primarily Internet Explorer) will not reveal the cookie to a third party.
Using Java to Set HttpOnly